Pan-GI Cell Atlas

• Full healthy reference	adult/paediatricfile_download	embryo/fetalfile_download
  Healthy reference by organ (adult/paediatric)	Oral cavityfile_download	Oesophagusfile_download	Stomachfile_download	Small intestinefile_download	Large intestinefile_download

• Dataset Name	Interactive Viewer	H5AD Data	RDS Data
  Healthy reference	pageview	file_download	file_download
  Extended	pageview	file_download
  Extended+	pageview	file_download

• chevron_rightDownload all
  file_downloadObjects file_downloadModels

  codeDownload using terminal

  Download all of the objects:

  content_copy

  wget https://cellgeni.cog.sanger.ac.uk/gutcellatlas/pangi/objects_pangi.zip

  Download all of the scANVI models:

  content_copy

  wget https://cellgeni.cog.sanger.ac.uk/gutcellatlas/scANVI/scanvi_models_pangi.zip

  Close

• chevron_rightRelease notes
  • Version 20241119
    • - First version, published atlas

Any questions? Please submit an issue in our GitHub repository